PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c6_19540V3.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 613aa    MW: 65556.1 Da    PI: 6.4524
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c6_19540V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-06567589325
                        S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                        ++ C +f+ +  C+ G++C F H
  Pp3c6_19540V3.2.p 567 RKACLYFSTSRGCRNGSSCAFLH 589
                        678******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.033564592IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4568590IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MAAVSSLPPG FEGAVAGTLP VQPVPETIVP NQARVSKKVS WASEDNLCQV RLFAAEDAPA  60
QSSIMLQDLL QAKKARFMHA LNPVVPVDLP PGFGPSMSMG TKPVIAAIFP SVPWRVPEHF  120
KLDPAWLVMA GGDSKEVFAQ KQRENRTLEA VYPRPSAIPE SPAEPSEVHL PFDSDDSNTL  180
IIPVVPLEDD ELPDVDEGLT PSDSTYERLQ ESFSGQKSVS PPPGFPSSST HVKSRNWFPE  240
APQDNNSFLL ATSTASAYGP PITISKNLVP PNGTAVQTMN TFNGRIGSMA LPARTTEGGT  300
EPDVAAATAA AYAALQQSND ATMIDRELLI KFLTNPSMLQ SLSEKLAQNP PGNHGVNRRN  360
PDSVDHNGMG ARGNGRVWNP TMTDQNKGGQ RYAEAPAVVE DLHTSHGYDR PPGFGAPPGT  420
NGLGQAPPQP GQGYGPSGSI PLSSISQLSA GYDQPAVSGS GRPISQRGEQ YYKDLISQHG  480
RKDEESVLGG AGAIDTGNSY RGVAWPKTIG PDRERRIESA ERTERSERPD SRARWAGRDV  540
VEMAALSVRQ GDSDQPSRLG QSRGKSRKAC LYFSTSRGCR NGSSCAFLHE VNNAERAKRP  600
KPEGKVNITG HI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001754550.10.0predicted protein
TrEMBLA9RKE90.0A9RKE9_PHYPA; Predicted protein
STRINGPP1S14_212V6.10.0(Physcomitrella patens)